--- sd_hide_title: true --- # Main Page ```{toctree} :hidden: true :maxdepth: 3 Downloads Tutorials Presentations CanGraph ToDoList ``` ::::{grid} :reverse: :gutter: 2 3 3 3 :margin: 4 4 1 2 :::{grid-item} :columns: 12 4 4 4 ```{image} ./_static/cangraph-mini.png :width: 200px :class: sd-m-auto sd-animate-grow50-rot20 ``` ::: :::{grid-item} :columns: 12 8 8 8 :child-align: justify :class: sd-fs-3 A utility to study and analyse cancer-associated metabolites using knowledge graphs ```{button-ref} Downloads :ref-type: doc :color: warning :class: sd-rounded-pill float-left Get started ``` ```{only} html [![GitHub Stars](https://img.shields.io/github/stars/OMB-IARC/CanGraph?style=social)](https://github.com/OMB-IARC/CanGraph) [![Lines of Code](https://img.shields.io/tokei/lines/codeberg.org/FlyingFlamingo/CanGraph?color=77b5fe&label=Lines%20of%20Code)](https://codeberg.org/FlyingFlamingo/CanGraph) [![License](https://img.shields.io/github/license/OMB-IARC/CanGraph)](https://mit-license.org/) ``` ::: :::: CanGraph is a python program that allows you to extract information about a newly discovered or existing metabolite from the following databases: ```{only} latex * Human Metabolome DB * DrugBank * Exposome Explorer * WikiData * SMPDB * MesH and MetaNetX ``` ```{only} html ::::{grid} 1 1 2 3 :class-container: text-center :gutter: 3 :::{grid-item-card} :link: CanGraph.GraphifyHMDB :link-type: doc :class-header: bg-light Human Metabolome DB 👨🏽 ^^^^^^^^^^^^^^^^^^^^^ Detailed information on small molecule metabolites found in the human body ::: :::{grid-item-card} :link: CanGraph.GraphifyDrugBank :link-type: doc :class-header: bg-light DrugBank 💉 ^^^^^^^^^^ Detailed drug data with comprehensive drug target information ::: :::{grid-item-card} :link: CanGraph.ExposomeExplorer :link-type: doc :class-header: bg-light Exposome Explorer 🔎 ^^^^^^^^^^^^^^^^^^^ Dedicated to biomarkers of exposure to environmental risk factors for disease, specially cancers ::: :::{grid-item-card} :link: CanGraph.QueryWikidata :link-type: doc :class-header: bg-light WikiData 📊 ^^^^^^^^^^ The free knowledge base with 99,190,630 data items that anyone can edit ::: :::{grid-item-card} :link: CanGraph.GraphifySMPDB :link-type: doc :class-header: bg-light SMPDB 🛤️ ^^^^^^^^ Small Molecule Pathways, over 70% of which not found in any other db ::: :::{grid-item-card} :link: CanGraph.MeSHandMetaNetX :link-type: doc :class-header: bg-light MeSH and MetaNetX 📍 ^^^^^^^^^^^^^^^^^^^ Unified NameSpace for metabolites and Medical Subject Headings. ::: :::: ``` For this purpose, CanGraph accepts any of the following inputs: * **InChI:** The International Chemical Identifier for the metabolite, which can be calculated using Open Source Software and identifies a metabolite with 99.99% accuracy based on its structure * **InChIKey:** The Hashed, shortened version of the InChI, sometimes used for efficiency * **Name:** A commonly accepted name for the metabolite; preferably, IUPAC's standarized name * **HMDB_ID:** The Metabolite's Identifier in the Human Metabolome Database * **ChEBI_ID:** The Metabolite's Identifier in the ChEBI Database which must be provided as explained in [CanGraph's README](CanGraph.rst) # Acknowledgements ::::{grid} 1 1 2 2 :::{grid-item} :columns: 11 This research was funded by the [Agence Nationale de la Recherche](https://anr.fr/en/) Project number [ANR-19-CE45-0021](https://anr.fr/Project-ANR-19-CE45-0021) (New approaches to bridge the gap between genome-scale metabolic networks and untargeted metabolomics – **MetClassNet**) and the [Deutsche ForschungsGemeinschaft](https://www.dfg.de/) Project number [431572533](https://gepris.dfg.de/gepris/projekt/431572533?language=en) (**MetClassNet**: new approaches to bridge the gap between genome-scale metabolic networks and untargeted metabolomics ) ::: :::{grid-item} :columns: 5 ```{image} ./_static/ANR-logo.png :align: center :target: https://anr.fr/Project-ANR-19-CE45-0021 :width: 100px ``` ::: :::{grid-item} :columns: 5 ```{image} ./_static/DFG-logo.jpg :align: center :target: https://gepris.dfg.de/gepris/projekt/431572533?language=en :width: 100px ``` ::: :::{grid-item} :columns: 11 You can check MetClassNet's Official Website [here](http://www.metclassnet.org/) ::: :::{grid-item} :columns: 11 Most of the work for this project has been carried out at the [International Agency for Research on Cancer's](https://www.iarc.who.int/) [OncoMetaBolomics Team](https://github.com/OMB-IARC) ::: :::{grid-item} :columns: 11 :margin: 3 ```{image} ./_static/IARC-logo-long.jpg :align: center :target: https://www.iarc.who.int/ :class: m-auto :width: 50% ``` ::: ::::